PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC54508_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 99aa    MW: 11032.2 Da    PI: 8.2294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC54508_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.3e-116592330
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                 r+h  +E+rRRdriNs ++ Lr+l+P++
  RrC54508_p1 65 RSHRLAEKRRRDRINSHLSALRKLVPNS 92
                 68************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3126299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-96592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-86594No hitNo description
SuperFamilySSF474591.83E-86594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-86592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MENSYESATK WSDSNSPYNM LSCSLLQSDS DLSRFNLGFA SSSSSGNFQA DEFVGGIEKG  60
ELLSRSHRLA EKRRRDRINS HLSALRKLVP NSDKVCSLL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325721e-141AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744811.12e-56PREDICTED: transcription factor bHLH51-like
SwissprotQ9XEF05e-41BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A078DV994e-56A0A078DV99_BRANA; BnaC04g46850D protein
TrEMBLA0A0D3C5C34e-56A0A0D3C5C3_BRAOL; Uncharacterized protein
STRINGBra017024.1-P3e-55(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-37bHLH family protein